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How to Fix ShipStation Shipping Rates Not Syncing in WooCommerce

Yuhda Ibrahim

Development Consultant

December 2, 2025

4 min read

Introduction

Running an online store means every part of the checkout process needs to work smoothly—especially shipping rates. But what if ShipStation shipping rates are not syncing in WooCommerce? It can throw off your customer experience, delay orders, and even cost you sales.

If you’ve noticed your store showing incorrect rates—or no rates at all—don’t panic. This issue is common, and the good news is it’s usually easy to fix with the right troubleshooting steps. In this guide, we’ll break down the most common reasons ShipStation shipping rates fail to sync in WooCommerce and how you can resolve them step by step. By the end, you’ll have your store back on track and your customers checking out without a hitch.

How to Fix ShipStation Shipping Rates Not Syncing in WooCommerce

Why ShipStation Shipping Rates Don’t Sync in WooCommerce

When WooCommerce and ShipStation fail to communicate properly, shipping rates can stop showing up at checkout. Common causes include:

  • Incorrect API credentials – Outdated or mismatched keys prevent syncing.
  • Plugin conflicts – Other WooCommerce extensions may interfere with ShipStation.
  • Outdated plugins or WordPress core – Version mismatches can break compatibility.
  • Shipping settings misconfiguration – Missing zones or carrier settings can block rate display.
  • Caching issues – Old cached data can stop updated rates from appearing.

Identifying the root cause is the first step toward fixing the issue.


Step 1: Verify ShipStation API Credentials

The most common reason for syncing issues is incorrect API keys.

  1. Go to WooCommerce > Settings > Integration > ShipStation.
  2. Check that the API Key and API Secret match the ones in your ShipStation account.
  3. If in doubt, generate a new set of credentials from ShipStation and re-enter them in WooCommerce.

This ensures your store and ShipStation can communicate properly.


Step 2: Update WooCommerce and ShipStation Plugins

Running outdated software is a recipe for errors.

  • Update WooCommerce to the latest version.
  • Update the ShipStation plugin from WordPress or your dashboard.
  • Check for WordPress core updates as well.

Keeping everything up to date ensures compatibility and patches known syncing bugs.


Step 3: Review WooCommerce Shipping Zones

Shipping rates won’t appear if your WooCommerce shipping zones are not set correctly.

  • Navigate to WooCommerce > Settings > Shipping > Shipping Zones.
  • Ensure each region where you sell has a shipping method assigned.
  • Double-check that ShipStation is correctly mapped to these zones.

Without proper zones, ShipStation won’t know where to apply rates.


Step 4: Check for Plugin or Theme Conflicts

Sometimes, another plugin or your theme might interfere with shipping calculations.

  • Temporarily deactivate all plugins except WooCommerce and ShipStation.
  • Test whether shipping rates appear.
  • Reactivate plugins one by one to identify the culprit.

If your theme is causing issues, try switching to a default WordPress theme like Storefront to test.


Step 5: Clear Caches and Refresh

Caching plugins or server-side caching may store outdated shipping data.

  • Clear your WordPress cache using your caching plugin.
  • If your hosting provider uses server caching, request a reset.
  • Clear your browser cache to test again.

A fresh reset often solves syncing delays.


Step 6: Enable Debug Mode for Shipping

WooCommerce has a handy debug mode for troubleshooting shipping problems.

  • Go to WooCommerce > Settings > Shipping > ShipStation.
  • Enable Debug Mode.
  • Review the logs to see what’s blocking the rates.

This provides clues that help you pinpoint whether the issue is API-related, configuration-based, or plugin-related.


Step 7: Contact ShipStation Support if Needed

If you’ve tried everything and shipping rates still don’t sync, it may be an account-level or carrier-specific issue. In that case:

  • Contact ShipStation Support with your logs.
  • Provide details about your WooCommerce version, plugin versions, and hosting setup.

They can check backend logs on their side and help finalize the fix.


Best Practices to Prevent Future Syncing Issues

To keep your store running smoothly, follow these practices:

  • Regularly update WooCommerce, WordPress, and ShipStation plugins.
  • Avoid installing unnecessary plugins that may cause conflicts.
  • Test checkout after making changes to shipping zones or settings.
  • Monitor logs for recurring errors to catch problems early.

These steps save you time and prevent future headaches.


Conclusion

When ShipStation shipping rates are not syncing in WooCommerce, it can feel stressful—but the fix is usually straightforward. By checking your API credentials, updating your plugins, reviewing shipping zones, clearing caches, and troubleshooting conflicts, you can quickly restore accurate shipping rates for your customers.

Keeping everything updated and testing regularly helps prevent these issues from happening again. If problems persist, ShipStation support can step in to resolve backend issues.

With these steps, your WooCommerce store can get back to what it does best: delivering a smooth shopping experience for your customers.

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